When AI is updated to a new version and you manually open an AIP after the upgrade it creates a backup, which is great. You can then save the project and you don't get the message again. The problem is if you upgrade AI and you don't manually open and save each project and check it into your repo, it will keep creating backups with every build; see attached image.
It would be nice if it only created one backup. We currently build the project using the solution.